bioRxiv · Sep 2026
Aviv D. Mizrahi-Kliger, Samantha Coury, Cameron L. Woodard, Karunesh Ganguly
Abstract
With practice, rapid early gains in performance are followed by a slower phase marked by kinematic refinement, automaticity and enhanced cortical and striatal interactions. While sleep is known to support early learning, its causal role in the slow phase of learning is not known. Here we recorded neuronal activity in primary motor cortex (M1) and the dorsolateral striatum (DLS) during long-term skill acquisition and interleaved sleep. Surprisingly, the slow phase of learning was marked by the emergence of a previously unrecognized 5–10 Hz oscillatory activity during NREM sleep that was coherent across M1 and DLS. This oscillation resulted in repeated joint reactivation of task-specific information in cortex and striatum. Strikingly, during later stages of training, such joint reactivation of task activity increased over the course of NREM sleep, suggesting that sleep-dependent processing strengthens cortico-striatal interactions. The strength of M1–DLS coherence was predictive of next-day performance gains and increased cortico-striatal coupling during task performance. Targeted closed-loop disruption of this oscillation during NREM sleep abolished performance gains, whereas switching to a dose-matched random stimulation paradigm enabled performance improvements in the same animals. Importantly, the same cortico-striatal 5–10 Hz rhythm was also found in sleeping non-human primates, where it was selectively enhanced following learning. Together, we identify, across species, a novel NREM sleep oscillation that is important for sleep-dependent performance gains which depend on cortico-striatal processing.
Scientific Reports · Sep 2026
Tatsuya Oikawa, Kowa Koida
Abstract
The lateral geniculate nucleus (LGN) relays color information from the retina to the cerebral cortex via anatomically segregated pathways. Although accumulating evidence suggests that neurons conveying signals from short-wavelength-sensitive (S) cones reside in the koniocellular (K) layers, it has been technically challenging to definitively correlate physiological recordings with their histological locations in macaques, which are routine trichromatic primate. In this study, we investigated the distribution of blue-responsive (S+) cells in the macaque LGN using extracellular single-unit recordings combined with a novel, high-resolution, and minimally invasive technique for marking recording sites. Recorded units were classified using cone-isolating stimuli to identify their cone inputs, and the recording site of S+ units were marked for histological verification. We found that the majority of cells responsive to S+ stimulation were located either within the K-layers or at the border between the K- and parvocellular (P) layers. We also found one instance located in the pregeniculate nucleus. Our results provide strong evidence that both New World and Old World monkeys share this color-segregating pathway in the LGN.
Nature Communications · Jul 2026
Enji Kim, Wonjung Park, Yeon-Mi Hong, … Jang-Ung Park
Abstract
Neuromodulation is widely employed to enhance neural activity and restore impaired circuitry, yet current methods suffer from invasiveness, limited depth, or poor spatial resolution. Temporal interference stimulation (TIS) has emerged as a non-invasive approach to modulate deep brain regions via interference of high-frequency electric fields, achieving spatial selectivity. Despite its potential, the physiological effects remain unexplored. Here, we present a customized liquid metal-based neural interface to record electrophysiological responses to TIS across diverse neural tissues, from brain organoids to mouse brains. The softness of the interface minimizes invasiveness while ensuring stable access to deep neural regions. Electrophysiological analyses reveal TIS-induced dynamics in neurodevelopment and functional connectivity. Furthermore, we investigated latent neural dynamics, presenting population-level neural activity, to compare responses across models of differing complexity and maturity. By combining soft neural interfaces with multi-scale analyses, this study uncovers how neuromodulation shapes neural dynamics and supports the development of future therapeutic strategies.
Science Advances · Jul 2026
Kei Watanabe, Masayuki Hirata, Takafumi Suzuki
Abstract
The frontopolar cortex (FPC) is thought to coordinate the more posterior lateral prefrontal cortex (LPFC) during complex, nonroutine behaviors through high-level functions such as management of multiple goals, exploration, and self-generated decision-making. However, direct neurophysiological comparisons with other prefrontal regions are lacking, leaving the FPC’s putative dominance untested. Contrary to this view, our comparison of neuronal activity across the full anteroposterior LPFC in macaques during six distinct tasks probing these functions revealed a posterior-to-mid LPFC dominance, with resource-allocation signals, novelty- and reward-related learning signals, and modality-invariant decision-monitoring signals all showing a common posterior bias. In contrast, regardless of the task demands, FPC exhibited inflexible encoding of just-executed actions and consistent task-related deactivation resembling default-mode network activity. We identified a turning point in this graded posterior-to-anterior transition from task-positive to task-negative regions around the border between the anterior and middle thirds of the LPFC. These findings challenge the prevailing notion that the LPFC is anterior dominant across primate species and provide evolutionary constraints on theories of human prefrontal organization.
Nature and Science of Sleep · Jul 2026
Aaron J Krom, Lottem Bergman, Yaniv Sela, … Yuval Nir
Abstract
Purpose: In anesthesia research and clinical practice, the level of consciousness is often assessed by stimulating subjects and observing their responses. It is possible that such stimulation alters the very state of consciousness being assessed. Whether this phenomenon is accompanied by specific cortical activities remains unknown. Here, we tested the effects of behavioral assessments on neuronal activity in the rat primary auditory cortex (A1) and perirhinal cortex (PrC). Methods: Neuronal spiking activity was recorded from microwire arrays targeting A1 and/or PrC in rats (n = 9), whilst presenting 40 Hz click-trains and gradually increasing infusion rates of propofol, remifentanil, ketamine or dexmedetomidine. We assessed righting reflex, pain withdrawal, whisking reflex, and corneal reflex every 12 minutes (every 360 auditory trials). We searched for significant changes in baseline firing rate and stimulus-evoked activities (where present) due to the behavioral assessments, by comparing 4 min intervals before and after the behavioral tests. Results: Out of 1004 units in 20 sessions, we found significantly elevated activity (p < 0.01) following behavioral tests in 32% and 20% of A1 auditory-responsive units and 8.6% and 5.3% of auditory-unresponsive units under propofol and dexmedetomidine, respectively, but not under remifentanil or ketamine. A higher proportion of units modulated their firing following behavioral tests in A1 compared to PrC, with median gains ranging from +0.23 to +1.06, depending on the specific response feature. Conclusion: Behavioral testing increases ongoing firing rate and responses to sounds in some cortical neurons. This increase is more prevalent in A1 than in PrC, mirroring clinical observations that patients exhibit basic responses under sedation, while complex processing, such as memory encoding, is impaired. The degree of neuronal modulation due to behavioral testing varies between anesthetic agents, mirroring their clinical phenotypes.
European Journal of Neuroscience · Jul 2026
Alexander R. Harris, Ben J. Allitt, Antonio G. Paolini
Abstract
Platinum electrodes are used in many bionic devices; however, they have limited charge injection capacity (CIC) and signal‐to‐noise ratio (SNR), restricting performance. Iridium oxide has substantially larger CIC and reduced impedance compared to platinum. While these types of electrochemical measurements are typically used to infer improved electrophysiological performance, there are no studies demonstrating this correlation. This article compares the electrochemical and acute electrophysiological recording performance of iridium and electrochemically activated IrOx. Increased iridium activation reduced total impedance at low‐intermediate frequencies and steady‐state electroactive area but had no impact on linear diffusion electroactive area. The total impedance had a poor correlation with background noise, SNR and spike count. The results contribute to the previous literature indicating linear diffusion electroactive area determines the number of neurons within recording distance of the electrode, impacting SNR and spike count. Measurements of impedance are mainly of benefit as an indirect measure of linear diffusion electroactive area, in which case the measurement and analysis must be performed appropriately. A wide range of IrOx activation states can be produced with increased CIC, without concern of neural recording performance impacts. However, higher oxidation states resulting in electrode dissolution or increase in electrode resistance may limit IrOx chronic performance.
Science Advances · Jun 2026
Jakyoung Lee, Yeon-Mi Hong, Enji Kim, … Jang-Ung Park
Abstract
Current disease-sensing devices primarily focus on distinguishing between healthy and diseased states, effective for diagnosis but limited in guiding optimal intervention timing for prevention. We developed a tripartite framework identifying pre-disease state in depression, a reversible phase preceding irreversible onset. Using complex systems theory, we analyzed early-warning signals emerging as biological systems approach critical transitions. Continuous monitoring of nine multimodal biomarkers—spanning electrophysiological, behavioral, and biological—enabled classification into normal, pre-disease, and disease states by quantitatively defining critical points. An artificial intelligence agent classified disease states with 95.2% accuracy using multimodal data, enabled by ultrasoft neural probes for stable, low-damage recordings. Therapeutic validation with a skin-attachable wireless vagus nerve stimulator integrating soft three-dimensional electrodes demonstrated superior efficacy during pre-disease states. Subjects treated during pre-disease showed faster recovery and greater therapeutic responses, while those treated after disease onset failed to achieve full recovery. This framework provides evidence-based rationale for early intervention.
Nature Neuroscience · Jun 2026
Kort Driessen, Fabio Squarcio, Giulio Tononi, Chiara Cirelli
Abstract
In mammals, slow-wave sleep is characterized by synchronized neuronal activity that alternates between on and off periods. Slow-wave activity (SWA) and synchrony reflect sleep need, are correlated with synaptic strength in cortical circuits and promote synaptic downselection and memory consolidation. Here we assessed whether these core benefits of sleep can be obtained during waking. We locally induced alternating on/off periods during wakefulness using optogenetics in mice. This led to a local ipsilateral reduction in SWA and synchrony during subsequent sleep, and to reduced markers of synaptic strength. Moreover, bilateral induction of off periods over sensorimotor cortex during sleep deprivation restored memory consolidation. Thus, inducing on/off activity during wakefulness is sufficient to reduce local sleep need and fulfill core functions of sleep.
Nature · May 2026
Lucas Y. Tian, Kedar Garzón Gupta, Daniel J. Hanuska, … Winrich A. Freiwald
Abstract
A hallmark of intelligence is proficiency in solving new problems, including those that substantially differ from previously seen problems. Problem solving in turn depends on the goal-directed generation of novel ideas and behaviours 1 , which has been proposed to involve internal representations of discrete units (or symbols) that can be recombined into numerous possible composite representations 1–7 . Although this view has been influential in cognitive-level explanations of behaviour, definitive evidence for a neuronal substrate of symbols has remained elusive. Here we identify a neural population that encodes action symbols—recombinable representations of discrete units of motor behaviour—in a specific area of the frontal cortex. In macaque monkeys performing a drawing-like task, we found behavioural evidence that action elements (strokes) exhibit three crucial features that indicate an underlying symbolic representation: (1) invariance over low-level motor parameters; (2) categorical structure, which reflects discrete action types; and (3) recombination into novel sequences. Based on simultaneous neural recordings across eight regions of the motor, premotor and prefrontal cortex, we identified population activity specifically in the ventral premotor cortex that encodes planned actions in a manner that also reflects invariance, categorical structure and recombination. These findings reveal a neural representation of action symbols localized to the ventral premotor cortex and a putative neural substrate for symbolic operations.
The Journal of Physiology · Apr 2026
S. Fang, T. Fleiner, F. Peng, … J. W. Schnupp
Abstract
Cochlear implants (CIs) have successfully restored hearing in more than one million patients with severe to profound hearing loss worldwide. Although CIs effectively restore speech perception in quiet environments, sound localization remains challenging for bilateral CI users, particularly their ability to utilize interaural time differences (ITDs). The majority of clinical CI processors use a coding strategy that encodes ITD information only in the envelope of electrical pulse trains rather than their pulse timing, which may contribute to the poorer spatial hearing perception of CI users. We recently demonstrated in a behavioural study on early deafened, bilaterally CI‐implanted rats that pulse timing ITDs completely dominate ITD perception, whereas sensitivity to envelope ITDs is almost negligible in comparison. Building on this, we here investigated the neurophysiological sensitivity of the inferior colliculus (IC) to envelope and pulse timing ITDs at two different pulse rates (900 and 4500 pulses/s) and three different stimulation modulations (5, 20 and 100 Hz) in CI rats with different hearing experiences. Our results indicate that IC neurons exhibit far greater sensitivity to pulse timing ITD than envelope ITD independent of pulse rate, modulation rate or hearing experience. These findings suggest that to improve binaural hearing outcomes in bilateral CI users, clinical stimulation strategies should provide informative pulse timing ITDs. image Key points Current bilateral cochlear implants mostly provide time cues of arriving sound in the envelope of stimulation rather than in the timing of pulses. A behavioural study on cochlear implanted rats has shown that pulse timing dominates binaural hearing. Here we examined the neural sensitivity to independent changes in time cues presented on the envelope or pulse timing, respectively, in rats with bilateral cochlear implants and different hearing experiences. Auditory midbrain neurons were consistently more sensitive to changes in pulse timing rather than envelope, irrespective of stimulus pulse rate, modulation rate or an animal's hearing experience.
eLife · Apr 2026
Andrés Pablo Varani, Caroline Mailhes-Hamon, Romain W Sala, … Daniela Popa
Abstract
Motor skill learning is a complex and gradual process that involves the cortex and basal ganglia, both crucial for the acquisition and long-term retention of skills. The cerebellum, which rapidly learns to adjust the movement, connects to the motor cortex and the striatum primarily via the ventral and intralaminar thalamus, respectively. Here, we evaluated the contribution of cerebellar neurons projecting to these thalamic nuclei in a skilled locomotion task in mice. Using a targeted chemogenetic inhibition that preserves the motor abilities, we found that cerebellar nuclei neurons projecting to the intralaminar thalamus contribute to learning and expression, while cerebellar nuclei neurons projecting to the ventral thalamus contribute to offline consolidation. Asymptotic performance, however, required each type of neurons. Thus, our results show that cerebellar neurons belonging to two parallel cerebello-thalamic pathways play distinct, but complementary, roles functioning on different timescales and both necessary for motor skill learning.
Annals of the New York Academy of Sciences · Apr 2026
Dobromir Dotov, Abraham Betancourt, Jorge Gámez, Hugo Merchant
Abstract
Animals synchronize their movements with external rhythms to coordinate perception and action, but the neural population mechanisms that allow them to attend and then initiate and sustain these rhythms remain unclear. Using recordings from the medial premotor cortex (MPC) of two macaque monkeys, we investigated neural dynamics during an attend‐then‐synchronize tapping task with visual metronomes. We found low‐dimensional neural manifolds that captured neural population trajectories. During the attention epoch, trajectories exhibited increasing amplitude and oscillatory strength with the successive stimuli, which is consistent with a dynamic system using a resonant mechanism. Then, the transition from perception to tapping synchronization was marked by a reliable shift into a distinct manifold subspace with rotatory dynamics, enabling accurate decoding of the switch in behavior. In addition, correct tapping trials were characterized by a more robust oscillatory structure not seen in incorrect trials. These findings demonstrate that the geometry and coherence of MPC neural trajectories encode different perceptual and motor aspects of tapping synchronization.
Communications Biology · Jan 2026
Benjamin J. B. Bréant, José Prius Mengual, Alexander Andrews, … Vladyslav V. Vyazovskiy
Abstract
Psychedelics lead to profound changes in subjective experience and behaviour, which are typically conceptualised in psychological terms rather than corresponding to an altered brain state or a distinct state of vigilance. Here, we performed chronic electrophysiological recordings from the neocortex concomitant with pupillometry in freely moving adult male mice following an injection of a short-acting psychedelic 5-methoxy-N,N-dimethyltryptamine (5-MeO-DMT). We report an acute induction of a dissociated state, characterised by prominent slow oscillations in the cortex and marked pupil dilation in behaviourally awake, moving animals. REM sleep was initially markedly suppressed, but was overcompensated in the subsequent 48 hours, while administration of 5-MeO-DMT immediately after sleep deprivation attenuated the subsequent rebound of sleep slow-wave activity. We argue that the occurrence of a dissociated state combining features of waking and sleep may fundamentally underpin the known and hypothesised effects of psychedelics — from dream-like hallucinations to reopening of the critical period for plasticity.
Neuron · 2026
Kameron K. Clayton, Bshara Awwad, Matthew McGill, … Daniel B. Polley
Abstract
Parvalbumin-expressing inhibitory neurons (PVNs) stabilize cortical network activity, generate gamma rhythms, and regulate experience-dependent plasticity. We found that PVNs act like a volume knob in the mouse auditory cortex (ACtx), bi-directionally adjusting neural and perceptual sensitivity to sound level over a 20 dB range. PVN-based gain adjustments were "sticky," such that a single bout of PVN activation at 40 Hz-but not at 1 or 70 Hz-sustainably dampened ACtx sound responsiveness, enhanced feedforward inhibition, and behaviorally desensitized mice to loudness. We then developed a mouse model of adult-onset hyperacusis by demonstrating ACtx hyperactivity, PVN hypofunction, and loudness hypersensitivity following a restricted noise-induced cochlear lesion. We found that several minutes of 40-Hz PVN stimulation in noise-exposed mice sustainably dampened ACtx hyperactivity and restored normal loudness sensitivity for 1 week. These findings demonstrate that sensory disorders caused by permanent peripheral injuries can be reversed by patterned stimulation of cortical circuits that directly regulate perception.
Cerebral Cortex · 2026
Lucas G Vattino, Kameron K Clayton, Troy A Hackett, … Anne E Takesian
Abstract
Basal forebrain cholinergic neurons (BFCNs) densely innervate auditory cortex (ACtx), conveying signals linked to internal brain states and external sensory cues. Acetylcholine (ACh) is known to rapidly modulate cortical circuits through nicotinic ACh receptor (nAChR)-mediated activation of layer 1 inhibitory neurons (L1-INs). However, BFCN terminals are also abundant in deeper layers, where their functional impact has received less attention. Using multi-plex in situ labeling across cortical layers and cell types, we found that layer 6 pyramidal neurons (L6-PNs) are highly enriched in diverse transcripts for nAChR subunits and muscarinic ACh receptors (mAChRs). In vivo optogenetic activation of BFCN axons revealed persistent modulation of regular spiking units in L2-6 but a rapid phasic activation only in L6. In acute slices, optogenetic activation of BFCN axons elicited fast nAChR-mediated excitatory post-synaptic potentials in L6-PNs, comparable to responses in L1-INs, and slower mAChR-mediated inhibitory responses. These findings identify L1-INs and excitatory L6-PNs as two major hubs for BFCN modulation of cortical circuits. By recruiting distinct receptor mechanisms and circuit motifs in L1 and L6, BFCNs may engage parallel pathways of cholinergic control that couple fast, transient modulation with slower, sustained regulation to shape cortical perception and plasticity.
Nature Communications · Dec 2025
Chengyue Ji, Yunfan Zhang, Zeyu Lin, … Yi Li
Abstract
The hypothalamus is critical for regulating behaviors essential for survival and locomotion, but how it integrates internal needs and transmits locomotion commands to the spinal cord (SC) remains unclear. We found that glutamatergic neurons in lateral hypothalamic area (LHA) are essential for regulating motivated locomotor activity. Using single-neuron projectome analysis, trans-synaptic tracing, and optogenetic manipulation, we showed that LHA facilitates motivated locomotion during food seeking via pontine reticular nucleus, oral part (PnO) projection neurons, rather than direct SC projections or indirect stress signaling via medial septum and diagonal band. Activating PnO-SC projection neurons also initiated locomotion. Importantly, LHA-PnO projection neurons were crucial for regulating locomotor recovery following mouse spinal cord injury (SCI). Motor cortex signals gated LHA deep brain stimulation treatment markedly promoted long-term restoration of hindlimb motor functions after severe SCI. Thus, we have identified a hypothalamic-pontine-spinal pathway and the stimulation paradigm for potential therapeutic intervention after SCI.
Journal of Neural Engineering · Nov 2025
Brandon S Coventry, Cuong P Luu, Edward L Bartlett
Abstract
Objective. Infrared neural stimulation (INS) has emerged as a potent neuromodulation technology, offering safe and focal stimulation with superior spatial recruitment profiles compared to conventional electrical methods. However, the neural dynamics induced by INS stimulation remain poorly understood. Elucidating these dynamics will help develop new INS stimulation paradigms and advance its clinical application. Approach. In this study, we assessed the local network dynamics of INS entrainment in the auditory thalamocortical circuit using the chronically implanted rat model. Our approach focused on measuring INS energy-based local field potential (LFP) recruitment induced by focal thalamocortical stimulation. We further characterized linear and nonlinear oscillatory LFP activity in response to single-pulse and periodic INS and performed spectral decomposition to uncover specific LFP band entrainment to INS. Finally, we examined spike-field transformations across the thalamocortical synapse using spike-LFP coherence coupling measures. Main results. We found that INS significantly increases LFP amplitude as a log-linear function of INS energy per pulse, primarily entraining to LFP β and γ bands with synchrony extending to 200 Hz in some cases. A subset of neurons demonstrated nonlinear, chaotic oscillations linked to information transfer across cortical circuits. Finally, we utilized spike-field coherences to correlate spike coupling to LFP frequency band activity and suggest an energy-dependent model of network activation resulting from INS stimulation. Significance. We show that INS reliably drives robust network activity and can potently modulate cortical field potentials across a wide range of frequencies in a stimulus parameter-dependent manner. Based on these results, we propose design principles for developing full coverage, all-optical thalamocortical auditory neuroprostheses.
Frontiers in Computational Neuroscience · Oct 2025
Haoming Yang, Pramod KC, Panyu Chen, … Jeffrey A. Riffell
Abstract
Neuronal synchronization refers to the temporal coordination of activity across populations of neurons, a process that underlies coherent information processing, supports the encoding of diverse sensory stimuli, and facilitates adaptive behavior in dynamic environments. Previous studies of synchronization have predominantly emphasized rate coding and pairwise interactions between neurons, which have provided valuable insights into emergent network phenomena but remain insufficient for capturing the full complexity of temporal dynamics in spike trains, particularly the interspike interval. To address this limitation, we performed in vivo neural ensemble recording in the primary olfactory center—the antennal lobe (AL) of the hawk moth Manduca sexta —by stimulating with floral odor blends and systematically varying the concentration of an individual odorant within one of the mixtures. We then applied machine learning methods integrating modern attention mechanisms and generative normalizing flows, enabling the extraction of semi-interpretable attention weights that characterize dynamic neuronal interactions. These learned weights not only recapitulated the established principles of neuronal synchronization but also facilitated the functional classification of two major cell types in the antennal lobe (AL) [local interneurons (LNs) and projection neurons (PNs)]. Furthermore, by experimentally manipulating the excitation/inhibition balance within the circuit, our approach revealed the relationships between synchronization strength and odorant composition, providing new insight into the principles by which olfactory networks encode and integrate complex sensory inputs.
Nature Communications · Oct 2025
Vincenzo Romano, Matthijs van Driessche, Nathalie van Wingerden, … Chris I. De Zeeuw
Abstract
Cerebral cortex and cerebellum are essential for sensorimotor control, but the dynamics of their interactions remain unclear. Here, we investigated which pathways prevail during preparation and execution of spontaneous whisker movements in mice. During preparation, neuronal activity of primary motor (M1) and somatosensory (S1) cortex precede that of cerebellar crus regions, with a lead that is consistent with relaying a copy of motor commands. After movement onset, the phase of the signal inverts, indicating a dominant vector signaling from cerebellum to cerebrum. At this stage, Purkinje cell activity correlates more with S1 than M1, generating a prediction of sensory consequences during motor actions. A computational cerebello-cortical model could replicate the changes in dynamics and directionality. Optogenetic manipulations of pons and thalamus confirm the modeled predictions on stage-dependent dynamics. Together our data point towards a swap in direction of information flow between cerebrum and cerebellum when motor preparation switches to execution.
Neurotherapeutics · Oct 2025
Mingeun Cho, Minhye Choo, Matthew Koh, … Sung-Min Park
Abstract
Sympathetic hyperactivity is a common feature observed in both primary and secondary hypertension, and neuromodulation-based therapies targeting this overactivity are under active investigation. The intermediolateral nucleus (IML) in the spinal cord plays a central role in sympathetic regulation, and its direct stimulation induces a transient, frequency-dependent reduction in blood pressure. However, this effect gradually diminishes as the baroreflex restores blood pressure to baseline. Therefore, this study aims to develop a closed-loop (CL) stimulation system that adjusts parameters in real-time based on neural activity recorded from the IML and to enhance and prolong the transient antihypertensive effect. This strategy was evaluated in normotensive and angiotensin II-induced hypertensive rat models and compared to open-loop (OL) stimulation of equal intensity. In both models, CL stimulation produced a more sustained blood pressure reduction than that of OL stimulation. These findings suggest that CL spinal cord stimulation offers a more effective and durable therapeutic option for treating hypertension.